multi_dendrix.evaluate.network.avg_pair_dist_of_gene_set

multi_dendrix.evaluate.network.avg_pair_dist_of_gene_set(network, gset)

Counts the number of interactions among genes in the given set.

Parameters:

• network (NetworkX Graph) – input PPI network.
• gset (list) – genes to test.

Returns:

avg_pair_dist (int) - average pairwise distance among genes in gset.

See also: eval_gene_sets_by_dist(), sum_dist().

Note: Used by eval_gene_sets_by_dist() when performing the average pairwise distance test on individual gene sets.