Removes annotation of genes or mutation classes for CNAs. By convention, I annotated CNA mutation classes with ‘(A)’ for amplification and ‘(D)’ for deletion. This removes these annoations so the genes can be mapped to PPI networks. For more information on naming conventions of genes and mutation classes, see Input File Formats.
| Parameters: | genes (list) – gene names or IDs. |
|---|---|
| Returns: | genes (list) - list of genes with annotation removed. |