paste3.visualization.stack_slices_pairwise

paste3.visualization.stack_slices_pairwise(slices, pis, is_partial=False)

Align spatial coordinates of sequential pairwise slices.

In other words, align:

slices[0] --> slices[1] --> slices[2] --> ...

Parameters:

• slices (list[AnnData]) -- List of slices.

• pis (list[ndarray]) -- List of pi (pairwise_align() output) between consecutive slices.

• return_params -- If True, addtionally return angles of rotation (theta) and translations for each slice.

• is_partial (bool) -- Boolean of whether this is partial pairwise analysis or a total one

Return type:

tuple[list[AnnData], Optional[list[float]], Optional[list[ndarray]]]

Returns:

• List of slices with aligned spatial coordinates.

If output_params = True, additionally return:

• List of angles of rotation (theta) for each slice.

• List of translations [x_translation, y_translation] for each slice.