HATCHet

HATCHet is an algorithm to infer allele and clone-specific copy-number aberrations (CNAs), clone proportions, and whole-genome duplications (WGD) for several tumor clones jointly from multiple bulk-tumor samples of the same patient or from a single bulk-tumor sample.

• HATCHet
  • Contents
  • Overview
    • Algorithm
    • Software
  • Setup
    • Installation
      • Standard Installation
      • Manual Installation
    • Using a Solver
      • Using Gurobi
      • Using a different Pyomo-supported solver
    • Required data
  • Usage
  • Current issues
  • Contacts

• Modules
  • hatchet package
    • hatchet.bin package
    • hatchet.data package
    • hatchet.utils package
      • hatchet.utils.solve package

Indices and tables

• Index

• Module Index

• Search Page